Doç. Dr. Olcay KURŞUN
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EĞİTİM:
ÖĞRENİM DÖNEMİ    DERECE               ÜNİVERSİTE                                                                ÖĞRENİM ALANI
2000-2004                    Doktora               University of Central Florida, Orlando, A.B.D.   Bilgisayar Bilimleri (Computer Science)
1998-2000                    Yüksek Lisans    Boğaziçi Üniversitesi                                                Bilgisayar Mühendisliği
1994-1998                    Lisans                  Boğaziçi Üniversitesi                                                 Bilgisayar Mühendisliği

 

YÜRÜTÜCÜLÜĞÜ YAPILAN DIŞ KAYNAKLI PROJELER:

 114E071 numaralı "Makine Öğrenmesi Yöntemleriyle Kortikal Katman-4 İmge Gösteriminin Kapasitesinin Ölçülmesi" başlıklı Tübitak 3001 projesi, Ağustos 2014-Şubat 2016.

 
114E178 numaralı "Nöropatik ölçüm testleri için çok bakışlı öznitelik çıkarımı, sınıflandırma ve analiz araçlarının geliştirilmesi" başlıklı Tübitak 1001 projesi,
Ekim 2014-Nisan 2016.
 

 

SCI/SCI-E Dergilerde Yayınlar (SON 5 YIL)

  1. Homan, P., Favorov, O. V., Lavender, C. A., Kursun, O., Ge, X., Busan, S., Dokholyan, N. V., Weeks, K. M. (2014) "Tertiary structure revealed by single-molecule correlated chemical probing of RNA", PNAS (Proceedings of the National Academy of Sciences USA), in press. Impact Factor: 10.5. Only 3 journals were cited over 500K times in 2013: Nature, PNAS and Science.
  2. Sakar, C.O., Kursun, O., Gurgen, F. (2014) "Ensemble Canonical Correlation Analysis", Applied Intelligence, vol. 40(2), pp. 291-304.
  3. Sakar, C.O., Kursun, O., Seker, H., Gurgen, F., Aydin, N., Favorov, O.V. (2014) "Combining Multiple Views: Case Studies on Protein and Arrhythmia Features", Engineering Applications of Artificial Intelligence, vol. 28, pp. 174-180.
  4. C. O. Sakar, O. Kursun, H. Seker, F. Gurgen (2014) "Combining Multiple Clusterings for Protein Structure Prediction", International Journal of Data Mining and Bioinformatics, vol. 10(2), pp. 162-174.
  5. Gurses, C., Azakli, H., Alptekin, A., Cakiris, A., Abaci, N., Arikan, M., Kursun, O., Gokyigit, A., Ustek, D. (2014) "Mitochondrial DNA profiling via genomic analysis in Mesial Temporal Lobe Epilepsy Patients with Hippocampal Sclerosis", Gene, vol. 538(2), pp. 323-327.
  6. Alptekin, A., Kursun (2013) "Miss One Out: A Cross-Validation Method Utilizing Induced Teacher Noise", International Journal of Pattern Recognition and Artificial Intelligence, vol. 27(7), 1351003.
  7. Sakar, B.E., Isenkul, M.E., Sakar, C.O. Sertbas, A., Gurgen, F., Delil, S., Apaydin, H., Kursun, O. (2013) "Collection and analysis of a Parkinson speech dataset with multiple types of sound recordings", IEEE Journal of Biomedical and Health Informatics, vol. 17(4), pp. 828-834.
  8. Gumus, E., Gormez, Z., Kursun, O. (2013) "Multi objective SNP selection using pareto optimality", Computational Biology and Chemistry, vol. 43, pp. 23-28.
  9. Mese, S., Arikan, M., Cakiris, A., Abaci, N., Gumus, E., Kursun, O., Onel, D., Ustek, D., Kaymakoglu, S., Badur, S., Yenen, O.S., Bozkaya, E. (2013) "The role of INNO-LiPA HBV DR and ultra-deep pyrosequencing in detecting the resistance mutations to nucleoside/nucleotide analogues in viral samples isolated from chronic hepatitis B patients", Journal of General Virology, vol. 94(Pt 12), 2729-2738.
  10. Gumus, E., Kursun, O., Sertbas, A., Ustek, D. (2012) "Application of Canonical Correlation Analysis for Identifying Viral Integration Preferences", Bioinformatics, vol. 28(5), pp. 651-655.
  11. Aruk, T., Ustek, D., Kursun, O. (2012) A Novel Partial Sequence Alignment Tool for Finding Large Deletions, The Scientific World Journal 2012:694813. Epub 2012 Apr 1.
  12. Ustek, D., Sirma, S., Gumus, E., Arikan, M., Cakiris, A., Abaci, N., Mathew, J., Emrence, Z.,  Azakli, H., Cosan, F., Cakar, A., Parlak, M., Kursun, O. (2012) "A genome-wide analysis of lentivector integration sites using targeted sequence capture and next generation sequencing technology", Infection, Genetics and Evolution, vol. 12(7), pp. 1349-1354.
  13. Sakar, C. O., Kursun, O., Gurgen, F. (2012) "A feature selection method based on kernel canonical correlation analysis and the minimum Redundancy–Maximum Relevance filter method", Expert Systems with Applications, vol. 39(3), pp. 3432-3437.
  14. Sakar, C. O., Kursun, O. (2012) "A method for combining mutual information and canonical correlation analysis: Predictive Mutual Information and its use in feature selection", Expert Systems with Applications, vol. 39(3), pp. 3333-3344.
  15. Kursun, O., Gumus, E., Sertbas, A., Favorov, O.V. (2012) "Selection of Vocal Features for Parkinson’s Disease Diagnosis", Int. J. of Data Mining and Bioinformatics, vol. 6(2), pp. 144-161.
  16. Favorov, O.V., Kursun, O. (2011) "Neocortical layer 4 as a pluripotent function linearizer", Journal of Neurophysiology, vol. 105(3), pp. 1342-1360.
  17. Kursun, O., Alpaydin, E., Favorov, O.V. (2011) "Canonical Correlation Analysis Using Within-class Coupling", Pattern Recognition Letters, vol. 32(2), pp. 134-144.
  18. Sakar, C.O., Demir, G., Kursun, O., Ozdemir, H., Altay, G., Yalcin S. (2011) "Feature selection for the prediction of tropospheric ozone concentration using a wrapper method”, Intelligent Automation and Soft Computing, vol. 17(4), pp. 403-413.  
  19. Sakar, C.O., Kursun, O. (2010) "Telediagnosis of Parkinson’s Disease Using Measurements of Dysphonia", Journal of Medical Systems, vol. 34(4), pp. 591-599.
  20. Kursun, O., Favorov, O.V. (2010) "Feature Selection and Extraction Using an Unsupervised Biologically-Suggested Approximation to Gebelein’s Maximal Correlation", International Journal of Pattern Recognition and Artificial Intelligence, vol. 24(3), pp. 337-358.
  21. Kilic, N., Kursun, O., Ucan, O.N. (2010) "Classification of the Colonic Polyps in CT-Colonography Using Region Covariance as Descriptor Features of Suspicious Regions", Journal of Medical Systems, vol. 34(2), pp. 101-105.
  22. Kursun, O., Sakar, C.O., Favorov, O.V., Aydin N., Gurgen, F. (2010) "Using Covariates for Improving the Minimum Redundancy Maximum Relevance Feature Selection Method", Turkish Journal of Electrical Engineering & Computer Sciences, vol. 18(6), pp.975-987.
  23. Sakar, C.O., Kursun, O., Ozdemir, H., Demir, G., Yalcin, S. (2010) "Identifying Effective Variables Using Mutual Information and Building Predictive Models of Sulfur Dioxide Concentration with Support Vector Machines", Ekoloji, vol. 19(76), pp. 102-112.
Konferans Yayınları (SON 5 YIL)
 
  1. Isenkul, M. E., Kursun, O., Favorov, O.V. (2014) "Methods for measuring the capacity of cortical Layer-4 representation", 22nd IEEE Signal Processing and Communications Applications Conference (SIU), Trabzon, Turkey.
  2. Develi, A., Sakar, B. E., Kursun, O. (2014) " Prediction of level and abrupt changes of ozon concentration", 22nd IEEE Signal Processing and Communications Applications Conference (SIU), Trabzon, Turkey.
  3. Isenkul, M.E., Sakar, B. E., Kursun, O., “Improved Spiral Test using Digitized Graphics Tablet for Monitoring Parkinson’s Disease”, 2nd International Conference on E-Health and TeleMedicine, Istanbul, Turkey, May 22-24, 2014.
  4. Sakar, B. E., Kursun, O., “Telemonitoring of Changes of Unified Parkinson's Disease Rating Scale using Severity of Voice Symptoms”, 2nd International Conference on E-Health and TeleMedicine, Istanbul, Turkey, May 22-24, 2014.
  5. Sakar, C.O., Kursun, O., Gurgen, F. (2013) "Feature Extraction Based on Discriminative Alternating Regression", MEDICON 2013, 25-28 September 2013, Seville, Spain, part V, pp. 730-733.
  6. Gumus, E., Kursun, O. (2013) "Unsupervised Genome Sequence Analysis Can Capture Read Direction", International Conference on Applied Informatics for Health and Life Sciences, Sept. 9-13, 2013, Istanbul, Turkey, pp. 63-66.
  7. Cevik, N., Sakar, C.O., Kursun, O. (2013) "Analysis of Relations Between Shared miRNAs of Different Species Using Canonical Correlation Analysis", International Conference on Applied Informatics for Health and Life Sciences, Sept. 9-13, 2013, Istanbul, Turkey, pp. 73-75.
  8. Kursun, O., Sakar, B.E., Isenkul, M.E., Sakar, C.O., Gurgen, F., Delil, S., Apaydin, H., Tommerdahl, M., Favorov, O.V. (2013), "Analysis of Effects of Parkinson's Disease on the Somatosensory System via CM-4 Tactile Stimulator", International Conference on Applied Informatics for Health and Life Sciences, Sept. 9-13, 2013, Istanbul, Turkey, pp. 57-60.
  9. Gormez, Z., Gumus, E., Sertbas, A., Kursun, O. (2013) "Comparison of Aggregators for Multi-Objective SNP Selection", 35th Annual International IEEE EMBS Conference, Osaka, Japan, July 2013.
  10. Gümüş E., Kurşun, O., Sertbaş, A. (2013) "Impact of Characteristics in Viral Integration Hotspots on Classification Performance", IEEE 21th Signal Processing and Applications Conference (SIU), Girne, Cyprus, April 2013 (in Turkish). 
  11. Aruk, T., Ustek, D., Kursun, O. (2012) "A Comparative Analysis of Smith-Waterman Based Partial Alignment", The Seventeenth IEEE Symposium on Computers and Communication (ISCC 2012), Cappadocia, Turkey, July 2012.
  12. Sakar, B.E., Şakar, C.O., Gurgen, F., Sertbas, A., Kursun, O. (2012) "A Validation Method for Comparing Classifiers on Imbalanced Datasets", IEEE 20th Signal Processing and Applications Conference (SIU), Muğla, Turkey, April 2012.
  13. Şakar, C.O., Kurşun, O., Karaali, A., Erdem, Ç. E. (2012) "Feature Extraction for Facial Expression Recognition by Canonical Correlation Analysis", IEEE 20th Signal Processing and Applications Conference (SIU), Muğla, Turkey, April 2012.
  14. Gormez, Z., Kursun, O., Sertbas, A., Aydin, N., Seker H. (2012) "Statistical Bias and Variance of Gene Selection and Cross Validation Methods: A Case Study on Hypertension Prediction", IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI2012), Hong Kong, January 2012.
  15. Kursun, O., Aytekin, T. (2012) "Combining Spatial Proximity and Temporal Continuity for Learning Invariant Representations", International Symposium on Foundation of Open Source Intelligence and Security Informatics (FOSINT-SI 2012), in conjunction with IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM-2012), Istanbul, Turkey, August 2012.
  16. İsenkul, M. E., Erdoğdu, B., Şakar, C. O., Gümüş, E., Delil, M. Ş., Gürgen, F., Sertbaş, A., Kurşun, O. (2011) "Parkinson Hastalığının Ses Disfonilerinden Teşhisi İçin Bir Ses Veritabanı Oluşturulması ve Örüntülerinin Kullanımı", Tıptekno’11 Tıp Teknolojileri Ulusal Kongresi, Antalya, Ekim 2011 (in Turkish).
  17. Gümüş, E., Kurşun, O., Sertbaş, A. (2010) "Yapay Öğrenme Uygulamalarında Biyomedikal Verilerin Doğru Kullanımı", Tıptekno’10 Tıp Teknolojileri Ulusal Kongresi, Antalya, Ekim 2010 (in Turkish).
  18. Kursun, O., Alpaydin, E. (2010) "Canonical Correlation Analysis for Multiview Semisupervised Feature Extraction", 10th International Conference on Artificial Intelligence and Soft Computing, Zakopane, Poland.
  19. Kaya, H., Kursun, O., Seker, H. (2010) "Stacking Class Probabilities Obtained from View-Based Cluster Ensembles", 10th International Conference on Artificial Intelligence and Soft Computing, Zakopane, Poland.
  20. Kursun, O. (2010) "Spectral Clustering with Reverse Soft K-Nearest Neighbor Density Estimation", IEEE World Congress on Computational Intelligence (WCCI 2010), Barcelona, Spain.
  21. Sakar, C.O., Kursun, O. (2010) "A Hybrid Method for Feature Selection Based on Mutual Information and Canonical Correlation Analysis", 20th International Conference on Pattern Recognition (ICPR 2010), pp. 4360-4363, Istanbul, Turkey.
  22. Sakar, C.O., Kursun, O., Seker, H., Gurgen, F. (2010) "Prediction of Protein Sub-nuclear Location by Clustering mRMR Ensemble Feature Selection", 20th International Conference on Pattern Recognition (ICPR 2010), pp. 2572-2575, Istanbul, Turkey.
İstanbul Üniversitesi Mühendislik Fakültesi Bilgisayar Mühendisliği Bölümü
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